Automatic Tools and Workflows


Topic Replies Activity
github.com/DataBiosphere/topmed-workflows/gatk-vcf-comparator 1 October 3, 2019
Github.com/shbrief/1_mutect1_pon 1 October 3, 2019
github.com/cancerit/dockstore-cgpmap/cgpmap-bamCsiOut_cwl_checker 1 October 3, 2019
Github.com/shbrief/5_purecn_dx 1 October 3, 2019
Github.com/mruffalo/cellranger-pipeline 1 October 3, 2019
Github.com/vjcitn/bioc_dockstore_loverna 1 October 3, 2019
Github.com/vjcitn/msiboxes/csvgen 1 October 3, 2019
Github.com/mruffalo/chromvar-cwl/chromvar 1 October 3, 2019
Github.com/gatk-workflows/gatk4-mitochondria-pipeline/mitochondria-pipeline 1 October 3, 2019
github.com/SciLifeLab/Sarek/Sarek 1 October 3, 2019
Github.com/vgteam/vg_wdl/vg-pipeline-workingexample 1 October 3, 2019
github.com/DataBiosphere/toolbox/CRAM_md5sum_cwl 1 October 3, 2019
github.com/terra-workflows/tetralogy-of-fallot/Mutate-reads-with-BAMSurgeon 1 October 3, 2019
Github.com/cancerit/workflow-seq-import/chksum_xam_to_interleaved_fq 1 October 3, 2019
github.com/vjcitn/mmSCQC/fromAaronLunSimpleSingleCell 1 October 3, 2019
github.com/EiffL/TXPipe 1 October 3, 2019
Github.com/vjcitn/dsdemo 1 October 3, 2019
Github.com/nf-core/epitopeprediction 1 October 3, 2019
Github.com/cancerit/workflow-seq-import/validate_interleaved_fq 1 October 3, 2019
Github.com/dockstore-testing/test_repo/_cwl_checker 1 October 3, 2019
github.com/CRG-CNAG/EOSC-Pilot 1 October 3, 2019
github.com/ICGC-TCGA-PanCancer/pcawg-gatk-cocleaning 1 October 3, 2019
github.com/AnalysisCommons/LDGds/LDGds 1 October 3, 2019
github.com/broadinstitute/wdl-for-dockstore/Mutect2-Test-2 1 October 3, 2019
github.com/HumanCellAtlas/skylab/Optimus 1 October 3, 2019
Github.com/nf-core/hlatyping 1 October 3, 2019
Github.com/bcbio/bcbio_validation_workflows/wes-agha-test-arvados_cwl_checker 1 October 3, 2019
github.com/ICGC-TCGA-PanCancer/wdl-pcawg-bwa-mem-workflow 1 October 3, 2019
Github.com/dockstore-testing/md5sum-checker/wdl_wdl_checker 1 October 3, 2019
github.com/ICGC-TCGA-PanCancer/pcawg-minibam 1 October 3, 2019