simutartor
simutator + ART in WDL. Simulate variants and Illumina reads from a ref genome.
Not throughly tested and known to be very slow on the ART step. Use at your own risk.
Sample inputs are based on arguments found in additional file 1 from:
Hunt, M., Letcher, B., Malone, K.M. et al. Minos: variant adjudication and joint genotyping of cohorts of b
This is a companion discussion topic for the original entry at github.com/aofarrel/simutartor/simutartor