github.com/aofarrel/TBfastProfiler/TBfastProfiler

TBfastProfiler

Run TBProfiler and fastp on some tuberculosis fastqs in a single WDL task. Make sure to use --copy-input-files if running with miniwdl.

If you only want to run fastp, use my standalone WDL or [Thiagen’s implementation](https://github.com/theiagen/public_health_viral_genomics/blob/d75e99bd471413ed9315fb31183dcff934d79204/tasks/task_read_


This is a companion discussion topic for the original entry at github.com/aofarrel/TBfastProfiler/TBfastProfiler