Github.com/aryeelab/topology-tools/chunk_pe_fastq

topology-tools

Setup

Install cromwell

On Macs Cromwell can be installed with

brew install cromwell

Otherwise you can download the Cromwell Jar from the releases page.

Set up Google Cloud Tools for access to docker images:

First download and install the Google Cloud CLI: Kurzanleitung: Google Cloud CLI installieren  |  Dokumentation zur Google Cloud CLI

Then authenticate with Google for access to the docker image registry

gcloud auth login
gcloud

This is a companion discussion topic for the original entry at github.com/aryeelab/topology-tools/chunk_pe_fastq