Github.com/beroukhim-lab/gatk4-data-processing/processing-for-variant-discovery-gatk4

gatk4-data-processing

Purpose :

Workflow with increased disk space as hard-coded runtime parameter to preserve call cashing for failed tasks.

processing-for-variant-discovery-gatk4 :

The processing-for-variant-discovery-gatk4 WDL pipeline implements data pre-processing according to the GATK Best Practices. The workflow takes as input an unmapped BAM list file (text file containing paths to unmapped bam files) to perfor


This is a companion discussion topic for the original entry at github.com/beroukhim-lab/gatk4-data-processing/processing-for-variant-discovery-gatk4