WDL pipeline for PCA analysis of AGD data
Questions & concerns
- Docker file to use?:
- In the VUMC examples scripts just use this docker for plink2, feel like we could use the same: hkim298/plink_1.9_2.0:20230116_20230707
- Otherwise, BROAD docker for plink2/regenie: warp-tools/3rd-party-tools/plink-regenie/Dockerfile at develop · broadinstitute/warp-tools · GitHub
- Getting R to run in a WDL script - should we separate out the R script as a different WDL?:
- How to get R t
This is a companion discussion topic for the original entry at github.com/blostein/agd_pca_wdl/agd_pca_project