Github.com/briandoconnor/plenary-resources-2020

Resources for the 2020 GA4GH Plenary

Workflows

A test workflow may be found here. This workflow runs a basic GWAS on an input 1000 genomes joint-called chromosome VCF using PLINK. A sample input file specifies the gs:// locations of some sample workflow inputs.

The metadata file CSV input is available both in a public GCS bucket as well as in the workflows directory. This file has metadata associ


This is a companion discussion topic for the original entry at github.com/briandoconnor/plenary-resources-2020