github.com/briansha/Annovar_Whitelist_Filter_WDL

Collaboration project with Charlie Condon ccondon@vols.utk.edu - VUMC intern.

Annovar_Whitelist_Filter_WDL

WDL that runs Annovar and a filtering R Script on the output of Mutect2

This WDL workflow can also be found on dockstore: Dockstore

The Annovar task uses an official perl image: Docker Hub

The WhitelistFilter task uses a custom docker image with R 4.1.0 and needed packages installed: https://hu


This is a companion discussion topic for the original entry at github.com/briansha/Annovar_Whitelist_Filter_WDL