github.com/broadinstitute/cellprofiler-on-Terra/cellpainting

CellProfiler on Terra

WDL workflows and scripts for running a CellProfiler pipeline on Google Cloud hardware.
Includes workflows for all steps of a full Cell Painting pipeline.

Works well in Terra, and will also work on any Cromwell server that can run WDLs.
Currently specific to a Google Cloud backend. (We are open to supporting more
backends, specifically cloud storage locations, in the future, including AWS and Azure.)

Three pipelines:

  1. Cell Painting

This is a companion discussion topic for the original entry at github.com/broadinstitute/cellprofiler-on-Terra/cellpainting