github.com/broadinstitute/depmap_omics/RNA_pipeline

ccle_processing

have a look at DepMap

What you need to process the Quarterly DepMap-Omics releases from Terra.

Here is a presentation of the pipeline.

We are using a set of key tools to process the sequencing output:


This is a companion discussion topic for the original entry at github.com/broadinstitute/depmap_omics/RNA_pipeline