github.com/broadinstitute/gatk-sv/BatchEffectAcrossContigs

[system]

GATK-SV

A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data.

Table of Contents

• Requirements
• Citation
• Quickstart
• Pipeline Overview
  • Cohort mode
  • Single-sample mode
  • gCNV model
  • Generating a reference panel
• Module Descriptions
  • [GatherSamp

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This is a companion discussion topic for the original entry at github.com/broadinstitute/gatk-sv/BatchEffectAcrossContigs