github.com/broadinstitute/long-read-pipelines/CallVariantsReadBased

A workflow for calling small and/or structural variants from an aligned BAM file. Note this calls out to read-based methods, not assembly-based methods. This also does not support CLR data.


This is a companion discussion topic for the original entry at github.com/broadinstitute/long-read-pipelines/CallVariantsReadBased