This workflow is designed to process data from the MASSeq v2 protocol and produce aligned reads that are ready for downstream analysis (e.g. transcript isoform identification). It takes in a raw PacBio run folder location on GCS and produces a folder containing the aligned reads and other processed data.
This is a companion discussion topic for the original entry at github.com/broadinstitute/long-read-pipelines/PB10xMasSeqSingleFlowcellv4