github.com/broadinstitute/long-read-pipelines/QCAssessmentDepthBased

Assess quality metrics from mosdepth coverage and callable loci data to determine pass/fail status. To pass, the fraction of callable bases must be greater than min_callable_fraction and at least min_coverage_threshold_regions fraction of the genome must have a coverage depth greater than min_coverage.


This is a companion discussion topic for the original entry at github.com/broadinstitute/long-read-pipelines/QCAssessmentDepthBased