github.com/broadinstitute/ops-terra-utils/ExportDataFromDatasetToOutputBucket

WDL Input Overview

This WDL script takes a dataset ID from a Terra Data Repository (TDR) and copies all associated files to the specified Google Cloud Storage bucket. The download process can be either flat or structured based on the download_type parameter. In flat mode, all files are copied to the root of the specified bucket, while in structured mode, the original file paths from the dataset are preserved. Users can also configure the maximum retry count and backoff time for handling fai


This is a companion discussion topic for the original entry at github.com/broadinstitute/ops-terra-utils/ExportDataFromDatasetToOutputBucket