Workspace for WDL implementation of PAV v1.1.2

This is a desynchronized replication of PAV (GitHub - EichlerLab/pav: Phased assembly variant caller) for implementation in WDL for use by Cromwell or any WDL compatible platform.

Any use of this repository should cite either of the following papers:

Ebert et al., “Haplotype-Resolved Diverse Human Genomes and Integrated Analysis of Structural Variation,” Science, February 25, 2021, eabf7117,

Audano et al., "PAV: An a

This is a companion discussion topic for the original entry at