github.com/broadinstitute/TAG-public/SmartSeq2_scRNA_pipeline

Translational Analysis Group (TAG) Public Repo

This github repository contains public Terra workflows maintained by
Translational Analysis Group (TAG). Below is the workflows TAG published.

SmartSeq QC

A pipeline for quality control of Smart Seq single cell analysis:

  • SS2_scRNA_pipeline
  • SC_Plate_QC

ichorCNA

A workflow that estimates tumor purity and ploidy of blood samples using ultra-low pass (ULP) whole-genome sequencing
(WGS) technology.

  • ichorCNA_step1
  • ichorCNA_step2


This is a companion discussion topic for the original entry at github.com/broadinstitute/TAG-public/SmartSeq2_scRNA_pipeline