Github.com/broadinstitute/viral-pipelines/augur_from_msa_with_subsampler

Build trees, and convert to json representation suitable for Nextstrain visualization. See https://nextstrain.org/docs/getting-started/ and Augur: A bioinformatics toolkit for phylogenetic analysis — Augur 23.0.0 documentation


This is a companion discussion topic for the original entry at github.com/broadinstitute/viral-pipelines/augur_from_msa_with_subsampler