Github.com/broadinstitute/viral-pipelines/classify_multi

Runs raw reads through taxonomic classification (Kraken2), human read depletion (based on Kraken2), de novo assembly (SPAdes), taxonomic classification of contigs (BLASTx), and FASTQC/multiQC of reads.


This is a companion discussion topic for the original entry at github.com/broadinstitute/viral-pipelines/classify_multi