cdphe-influenza-wastewater-analysis
WDL workflows for 1) Freyja analysis and 2) alignment of clinical samples amplified with universal primers to Freyja references.
The Freyja workflow is flexible enough that it can be run on any freyja pathogen.
This is a companion discussion topic for the original entry at github.com/CDPHE-bioinformatics/cdphe-influenza-wastewater-analysis/freyja_other_pathogens