This repository contains in development files for a pipeline to process RSV sequence data and summarize their data.


The current in dev version only takes paired-end (PE) reads.

*Next generation sequencing and bioinformatic and genomic analysis at CDPHE is not CLIA validated at this time. These workflows and their outputs are not to be used for diagnostic purposes and should only be used for public health action and surveillance purposes. CDPHE is not responsible fo

This is a companion discussion topic for the original entry at