In development

This repository is in active development. This document describes the Colorado Department of Public Health and Environment’s workflow for the assembly and anlaysis of whole genome sequenicng data of influenza A and B ulitizing the platform. The influenza_assembly.wdl workflow was adapted from and influenced by Thieagen Genomics’s wf_theiacov_illumina_pe workflow for influenza.

Workflow overview

This workflow can handle paired end (PE) and sing

This is a companion discussion topic for the original entry at