Annovar_Whitelist_Filter_WDL
WDL that runs Annovar and a filtering R Script on the output of Mutect2
This WDL workflow can also be found on dockstore: Dockstore
The Annovar task uses an official perl image: Docker Hub
The WhitelistFilter task uses a custom docker image with R 4.1.0 and needed packages installed: Docker Hub
annovar_whitelist_filt
This is a companion discussion topic for the original entry at github.com/charliecondon/Annovar_Whitelist_Filter_WDL