UDPAnalysisBMTB
UDP Candidate Analysis scripts and WDL workflows for detecting causal genetic variation
NIH Biowulf Usage
Setup the main working directory
cd /data/$USER
Launch an interactive session on Biowulf and load requisite Biowulf modules:
sinteractive
module load cromwell/40 git python/3.6
Clone the github repo and create a work directory for running the wdl workflow:
BMTB_WDL_DIR="/data/$USER/bmtb_wdl_run/wdl_tools"
mkdir -p ${BMTB_WDL_DIR} &
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/cmarkello/bmtb_wdl/bmtb'>github.com/cmarkello/bmtb_wdl/bmtb</a></small>