github.com/cwhelan/mocha/Gtc2Vcf

A bcftools extension to call mosaic chromosomal alterations starting from phased VCF files with either B Allele Frequency (BAF) and Log R Ratio (LRR) or allelic depth (AD). If you use this tool in your publication, please cite the following paper and preprint:

Loh P., Genovese G., McCarroll S., Price A. et al. Insights about clonal expansions from 8,342 mosaic
chromosomal a
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/cwhelan/mocha/Gtc2Vcf'>github.com/cwhelan/mocha/Gtc2Vcf</a></small>