B cell repertoire analysis pipeline with immcantation framework.
Usage:
The typical command for running the pipeline is as follows:
nextflow run nf-core/bcellmagic --reads '*_R{1,2}.fastq.gz' -profile standard,docker
Mandatory arguments:
--cprimers Path to CPrimers FASTA File
--vprimers Path to VPrimers FASTA File
--metadata Path to Metadata TSV
--umi_length Length of UMI barco
This is a companion discussion topic for the original entry at github.com/denis-yuen/bcellmagic