MSSNG DB6 CCDG Compliant Data Analysis Pipeline

This pipeline was used for the analysis of the MSSNG autism cohort for the DB6 release. The pipeline is written and optimized to run on GCP and currently will not run in other cloud or local environments.


The pipeline will take paired end FASTQ files and perform sequence alignment using BWA and Sentieon, followed by variant calling using Sentieon as we

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