MSSNG DB6 Joint Genotyping Mergbe By Chromosome Pipeline
Merge shards corresponding to a single chromosome, then extract just those regions. gvcf_URLs is still required only for sample information. region should be a .bed file containing only single chromosome regions (e.g. chr1.bed contains chr1 1 248956422) (these files for GRCh38 are included in bed_region_files/). This will output one GVCFtyper_main and one GVCFtyper_file file per chromosome. The GVCFtyper_main file conta
This is a companion discussion topic for the original entry at github.com/DNAstack/mssng-db6-joint-genotype-merge-by-chr