github.com/DNAstack/PacBio-Workflows/Pacbio-Human-WGS-Workflow

Automatic Tools and Workflows
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PacBio Human WGS Workflow

Analysis of human whole genome sequencing (WGS) data using PacBio long-read sequencing data. This workflow uses raw PacBio FASTQ data from specified affected and unaffected persons, and produces read alignments, phased variant calls, gVCF files, and structural variant (SV) signatures for each individual.

Workflow input

  • smrtcells_sample_trial.cohort_info: An object containing two array-type keys, affected_person and unaffected_persons, each of which is s
This is a companion discussion topic for the original entry at github.com/DNAstack/PacBio-Workflows/Pacbio-Human-WGS-Workflow