github.com/DOH-HNH0303/public_health_bacterial_genomics/Recomb_aware_phylo_analysis_waphl

Public Health Bacterial Genomics

Bioinformatics workflows for genomic characteriation, submission preparation, and genomic epidemiology of bacterial pathogens of concern.

Note to Users

This repository and the workflows use the Theiagen Public Health Bacterial Genomics workflows as a base which are in the early stages of development. We recommend usage of their stable version releases as the main and development branches are subject to routine updates.


This is a companion discussion topic for the original entry at github.com/DOH-HNH0303/public_health_bacterial_genomics/Recomb_aware_phylo_analysis_waphl