roundabout
The fundamental goal of this repo was to create something quick and reproducible to find large regions of similarity between highly related plasmids - like those in an outbreak.
roundabout uses blast to find regions of similarity (as opposed to groups of genes that would be required for synteny), and then assigns those regions a color. Those regions and colors are then visualized via circos.
USAGE
nextflow run erinyoung/roundabout --fastas <directory to fastas>
There
This is a companion discussion topic for the original entry at github.com/erinyoung/roundabout