gatk4-basic-variant-validation
Simple workflow to validate a VCF (or GVCF) – NOT Best Practices, only for teaching/demo purposes.
Inputs and outputs
Required inputs
- One VCF file or GVCF file and its index (can be bgzip/tabix)
- Genomic resources: reference genome in FASTA format (.fasta) and its accessory files (.fasta.fai and .dict)
Optional inputs
- Resourcing and environment parameters including memory, disk space and container are all customizable
Outputs
- A val
This is a companion discussion topic for the original entry at github.com/gatk-workflows/gatk4-basic-variant-validation