Github.com/human-pangenomics/sequencing_data_analysis

read_stats

Very simple tool for generating read length distributions from fastq/fasta files

Output

A histogram of read lengths (with automatic or predefined bounds):

histogram

A Nx plot of read lengths:

Nx

A summary table with statistics:

file	GM24385_1_Guppy_4.2.2_prom.fastq
total_reads	2900987
total_bp	26945078155
total_Gbp	26
min	1
max	503494
mean	92
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/human-pangenomics/sequencing_data_analysis'>github.com/human-pangenomics/sequencing_data_analysis</a></small>