github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools/pcawg-oxog-full-workflow

This workflow will run OxoG, variantbam, and annotate.
Run this as dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json


This is a companion discussion topic for the original entry at github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools/pcawg-oxog-full-workflow