github.com/IGVF/single-cell-pipeline/IGVF-chromap_index

IGVF Single-cell pipeline

Welcome to the IGVF Single Cell Pipeline repository.

Table of Contents

Introduction

This pipeline had been designed by the IGVF single-cell focus group for automated pre-processing and quality control of single-cell sequencing data. It supports native execution on the Terra/AnViL platform but can also be executed on both


This is a companion discussion topic for the original entry at github.com/IGVF/single-cell-pipeline/IGVF-chromap_index