github.com/ImagingDataCommons/CloudSegmentator/convertRadiomicsJsonToDataframeOnTerra

Welcome to the CloudSegmentator repository.

This repository contains the complete source code used to develop workflows for analysis on FireCloud (Terra) or Seven Bridges Cancer Genomics Cloud.

What is this repo about?

  • There is more than 40TB of publicly available data on Imaging Data Commons (IDC) and even more on The Cancer Imaging Archive (TCIA)
  • Much of this data is not annotated due to various reasons such as lack of access to Radiologists or the data may be too large to anno

This is a companion discussion topic for the original entry at github.com/ImagingDataCommons/CloudSegmentator/convertRadiomicsJsonToDataframeOnTerra