This demo workflow executes the bedtools intersect command on the provided VCF and BED files, producing a filtered VCF file based on the intersection, along with a count of variants.


  • query_vcf: Input VCF file containing variants.
  • query_bed: Input BED file specifying the region of interest.
  • label: A string label used as a prefix for output files.


  • output_vcf: Output VCF file containing variants within the specified region.
  • `coun

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