github.com/IMCM-OX/terra-wdl-demo

terra-wdl-demo

About

This demo workflow executes the bedtools intersect command on the provided VCF and BED files, producing a filtered VCF file based on the intersection, along with a count of variants.

Inputs

  • query_vcf: Input VCF file containing variants.
  • query_bed: Input BED file specifying the region of interest.
  • label: A string label used as a prefix for output files.

Outputs

  • output_vcf: Output VCF file containing variants within the specified region.
  • `coun

This is a companion discussion topic for the original entry at github.com/IMCM-OX/terra-wdl-demo