github.com/iwc-workflows/Assembly-Hifi-HiC-phasing-VGP4/main

Contiging Solo w/HiC:

Generate phased assembly based on PacBio Hifi Reads using HiC data from the same individual for phasing.

Inputs

  1. Hifi long reads [fastq]
  2. HiC forward reads (if multiple input files, concatenated in same order as reverse reads) [fastq]
  3. HiC reverse reads (if multiple input files, concatenated in same order as forward reads) [fastq]
  4. K-mer database [meryldb]
  5. Genome profile summary generated by Genomescope [txt]
  6. Name of first assembly
  7. Name of second as

This is a companion discussion topic for the original entry at github.com/iwc-workflows/Assembly-Hifi-HiC-phasing-VGP4/main