UCSC’s Summer BioInformatics Short Course

This repo is used for the AnVIL module of UCSC’s Bioinformatics & Coding Summer Short Course (Summer 2021). It holds a WDL for calling samtools index on bam files which is used as part of the hands-on section of the course.


indexBam.wdl runs samtools index on a bam file. This WDL is for learning purposes only and is not designed or tested for production use.


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This is a companion discussion topic for the original entry at