Human Pan-Genome Project and Hifiasm
This repository contains the workflow, Dockerfile and some test json files to run hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads. The workflow is going to be used in generating the inital assemblies of the samples sequenced by Human Pan-Genome Project.
Dependencies to run locally
This is a companion discussion topic for the original entry at github.com/masri2019/hpp-assembly/asset-without-hifi-alignment