Github.com/meredith705/gfase_wdl/asmgene

gfase_wdl

wdl workflow to run GFAse trio phasing or linked read phasing.

Some small files to test the WDL with:

# gfa
wget https://rlorigro-public-files.s3.us-west-1.amazonaws.com/gfase/paolo_ul_guppy6_run14/test_subset/run14_uul_test_subset.gfa
# kmer fasta files
wget http://public.gi.ucsc.edu/~memeredith/hg002_parental_kmer_files/hg04.k31.het_hom.17-71.unique.fa
wget http://public.gi.ucsc.edu/~memeredith/hg002_parental_kmer_files/hg03.k31.het_hom_14-62.unique.fa
# linked read fastq fi
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/asmgene'>github.com/meredith705/gfase_wdl/asmgene</a></small>