github.com/meredith705/wdl_workflows/quastOutput

WDL Workflows

WDL workflows for useful tools.

WDL Cromwell Dependencies

Download cromwell tools to run wdl worflows locally:

wget https://github.com/broadinstitute/cromwell/releases/download/71/cromwell-71.jar
wget https://github.com/broadinstitute/cromwell/releases/download/71/womtool-71.jar

Install jdk

sudo apt-get update
sudo apt install openjdk-17-jre-headless

Install docker ( directions from here Install Docker Engine on Ubuntu | Docker Documentation )

curl -fsSL https:/
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/quastOutput'>github.com/meredith705/wdl_workflows/quastOutput</a></small>