Shasta Evaluation WDL Workflows
WDL workflows that automates runing GFAse, yak, dipcall, and whatshap on shasta assembly small bubble gfa files.
WDL Cromwell Dependencies
Download cromwell tools to run wdl worflows locally:
wget https://github.com/broadinstitute/cromwell/releases/download/71/cromwell-71.jar
wget https://github.com/broadinstitute/cromwell/releases/download/71/womtool-71.jar
Install jdk
sudo apt-get update
sudo apt install openjdk-17-jre-headless
Install do
This is a companion discussion topic for the original entry at github.com/meredith705/wdl_workflows/seqkitStats