github.com/mgbpm/biofx-workflows/BiobankRoRAlamutWorkflow

Loading Alamut and Gnomad Workflow Module

The Biobank Return of Results pipeline is meant to filter Biobank datasets and create VCFs for individual samples within the datasets. This step of the pipeline is intended to be run following the Biobank RoR Individual Sample Preparation Workflow (BiobankRoRSamplePrepWorkflow). It will batch annotate a prepared VCF from the sample prep workflow using Alamut and gnomAD, then load the annotations to FAST.

Input Parameters

| Type | Name | Req’d | D


This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/BiobankRoRAlamutWorkflow