github.com/mgbpm/biofx-workflows/BiobankRoRWorkflow

Background

The Biobank return of results workflow is meant to filter Biobank datasets and create VCFs for individual samples within the datasets. The individual sample VCFs will then be annotated with ALAMUT and gnomAD and finally loaded into FAST.

Input Parameters

Type Name Req’d Description Default Value
File regions_bed yes BED file containing gene regions; the VCFs in the dataset will be filtered to these regions
File

This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/BiobankRoRWorkflow