PGx Workflow

Runs the workflow to automate discovery, annotation, and report creation for PGx variants for exomes and genomes.

Input Parameters

Type Name Req’d Description
File input_cram Yes Sample CRAM/BAM file to run the workflow on
File input_crai Yes Corresponding CRAI/BAI file to the CRAM/BAM file
String sample_id Yes Full sample identifier
String accession_id Yes Sample accession (PM#)

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