github.com/mgbpm/biofx-workflows/PGxWorkflow

PGx Workflow

Runs the workflow to automate discovery, annotation, and report creation for PGx variants for exomes and genomes.

Input Parameters

Type Name Req’d Description
File input_cram Yes Sample CRAM/BAM file to run the workflow on
File input_crai Yes Corresponding CRAI/BAI file to the CRAM/BAM file
String sample_id Yes Full sample identifier
String accession_id Yes Sample accession (PM#)
Stri

This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/PGxWorkflow