PRS PCA Workflow
Input Parameters
| Type | Name | Req’d | Description | Default Value |
|---|---|---|---|---|
| File | condition_file | Yes | Tar file of condition-/disease-specific variant weights, score weights, and pca files | |
| File | input_vcf | Yes | Joint or single-sample VCF | |
| File | pruning_sites_for_pca | No | Pruning sites used to perform PCA if pca_projections is not provided | |
| String | chr_encoding | No | Chromosome encoding string; used to perform P |
This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/PRSPCAWorkflow