github.com/mobinasri/flagger/LongReadAlignerSecphase

Evaluating dual assemblies with Flagger

Overview

Here is a description of a read-based pipeline that can detect different types of mis-assemblies in a draft dual assembly. (What is a dual assembly? Read this page). One core component of this pipeline is another pipeline named Flagger. Flagger recieves the read alignments to a draft dual assembly, detects


This is a companion discussion topic for the original entry at github.com/mobinasri/flagger/LongReadAlignerSecphase