github.com/nanoporegenomics/assembly_wf/shastaHapdupWorkflow

WDL workflows for de novo assembly with nanopore data

Workflows:

  1. Shasta + Hapdup workflow. Performs haploid de novo assmebly of ONT data using Shasta, and the phases it into diploid using

See the pages of the corresponding tools for more details:


This is a companion discussion topic for the original entry at github.com/nanoporegenomics/assembly_wf/shastaHapdupWorkflow