github.com/nanoporegenomics/variant_calling_wf/hapdiffWorkflow

WDL variant calling workflows

Various mapping-based workflow for long-read variant calling

  1. Pepper-Margin-DeepVariant
  2. Sniffles2
  3. hapdiff
  4. margin phase

This is a companion discussion topic for the original entry at github.com/nanoporegenomics/variant_calling_wf/hapdiffWorkflow